Introduction Show the mutation signal of a sample Code explanation Load the package, read in the library(MutationalPatterns) nhdp <- readRDS(‘mousesignatures_norm.rds’
Introduction Use GenVisR package to draw heat map of driver mutation Code explanation Load the package, read in the data
Introduction View local motifs through sequence logo Code explanation Load the package, read in the data library(MutationalPatterns) library(BSgenome.Mmusculus.UCSC.mm10) library(ggseqlogo) library(gridExtra)
Introduction Through mouse models of carcinogenesis in different environments, it is found that tumors caused by different chemical exposures have
Introduction The expression of some prostate cancer-specific genes has nothing to do with mutations, so the author wanted to see
Introduction Through the line graph, the author showed that different types of prostate cancer have different methylation patterns. On ChrX,
Bar graph of the relationship between the amount of DNA methylation valleys and H3K4me3 and H3K27me3
Introduction DNA methylation valleys (DNA methylation valleys, DMV) are a wide range of hypomethylated regions, which are related to the
Introduction The TIDE score calculated by the TIDE software consists of two parts: dysfunction score and exclusion score. The calculation
# Data processing n_hmr = rep(0, 100) for(i in 1:length(sample_ids_wgbs)){ n_hmr[i] = length( hmr[[ sample_ids_wgbs[i] ]] ) } m =
The part of the heat map function written by the author himself can be called directly after drawing # Plots