Database

Comparison table of ensemble IDs and hugo gene symbols

Introduction

Do not require additional dependencies, follow this comparison table to merge to switch between ensemble ID and gene symbol

Description

The update time is unknown, the current number of genes in it is 32738

download link

Link:https://pan.baidu.com/s/1Kebn7A6bm5_0XUUvQJSXtA
Extraction code:az7l

Or use R package

library(org.Hs.eg.db)

gene <- "TP53"
gene_names = mapIds(x = org.Hs.eg.db,keys = gene,column = "GENENAME",keytype = "SYMBOL", multiVals="first")
# Here GENeNAME can be replaced by follows:
#ACCNUM,ALIAS,ENSEMBL,ENSEMBLPROT,ENSEMBLTRANS,ENTREZID,ENZYME
#EVIDENCE,EVIDENCEALL,GENENAME,GENETYPE,GO,GOALL,IPI,MAP,
#OMIM,ONTOLOGY,ONTOLOGYALL,PATH,PFAM,PMID,PROSITE,REFSEQ,
#SYMBOL,UCSCKG,UNIPROT

library(org.Hs.eg.db)
library(data.table)

xx <- unlist(as.list(org.Hs.egALIAS2EG))
map_dt <- data.table(Symbol = names(xx), ID = xx)
map_dt <- map_dt[!duplicated(Symbol),]
Gene_ID <- map_dt[data.table(Symbol = gene),ID, on = "Symbol"]

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